Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95789.1Cell fate regulator YaaT, PSP1 superfamily. (254 aa)    
Predicted Functional Partners:
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.883
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.879
GAQ95787.1
DNA repair protein RadC; Belongs to the UPF0758 family.
       0.802
GAQ95790.1
DNA polymerase-3 subunit delta'.
  
   0.767
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.750
GAQ95786.1
Hypothetical protein.
       0.737
GAQ95792.1
Methionine synthase II.
       0.711
GAQ95793.1
Hypothetical protein.
       0.711
GAQ95784.1
Fructose-1,6-bisphosphatase II.
       0.650
GAQ95785.1
Putative regulatory protein, FmdB family.
       0.622
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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