STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_338CRISPR-associated protein Csm3. (245 aa)    
Predicted Functional Partners:
TAGGR_336
CRISPR-associated protein Csm5.
 
 
 0.999
TAGGR_337
CRISPR-associated protein Csm4.
 
 
 0.999
TAGGR_339
CRISPR-associated protein Csm2.
 
 
 0.999
TAGGR_340
CRISPR-associated protein Csm1.
 
 
 0.996
GAQ95519.1
Hypothetical protein.
 
 
 0.984
TAGGR_335
CRISPR-associated endoribonuclease Cas6.
 
   
 0.945
TAGGR_341
CRISPR-associated protein Csx14.
 
     0.788
cas1-2
CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.612
GAQ95451.1
CRISPR-associated protein, TIGR02710 family.
 
     0.552
GAQ95450.1
Hypothetical protein.
  
     0.495
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.