TAGGR_342 protein (Thermodesulfovibrio aggregans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAGGR_342

c-di-GMP-specific phosphodiesterase class I. (360 aa)

Predicted Functional Partners:

GAQ94375.1

0.984

GAQ94797.1

0.982

GAQ94406.1

0.945

GAQ94913.1

0.939

GAQ95423.1

0.932

GAQ95727.1

0.917

GAQ95223.1

0.889

GAQ94656.1

0.888

GAQ95291.1

0.877

GAQ95709.1

0.841

Your Current Organism:

Thermodesulfovibrio aggregans

NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAQ94375.1	GAQ94406.1	TAGGR_1555	TAGGR_1586	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.663
GAQ94375.1	GAQ94913.1	TAGGR_1555	TAGGR_11108	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.640
GAQ94375.1	GAQ95223.1	TAGGR_1555	TAGGR_2110	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.615
GAQ94375.1	GAQ95291.1	TAGGR_1555	TAGGR_2180	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.974
GAQ94375.1	GAQ95423.1	TAGGR_1555	TAGGR_2316	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.559
GAQ94375.1	GAQ95709.1	TAGGR_1555	TAGGR_3184	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.870
GAQ94375.1	TAGGR_342	TAGGR_1555	TAGGR_342	Diguanylate cyclase (GGDEF) domain-containing protein.	c-di-GMP-specific phosphodiesterase class I.	0.984
GAQ94406.1	GAQ94375.1	TAGGR_1586	TAGGR_1555	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.663
GAQ94406.1	GAQ94656.1	TAGGR_1586	TAGGR_1841	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.458
GAQ94406.1	GAQ94797.1	TAGGR_1586	TAGGR_1983	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.653
GAQ94406.1	GAQ94913.1	TAGGR_1586	TAGGR_11108	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.699
GAQ94406.1	GAQ95223.1	TAGGR_1586	TAGGR_2110	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.878
GAQ94406.1	GAQ95291.1	TAGGR_1586	TAGGR_2180	PAS domain S-box-containing protein.	PAS domain S-box-containing protein.	0.997
GAQ94406.1	GAQ95423.1	TAGGR_1586	TAGGR_2316	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.444
GAQ94406.1	GAQ95709.1	TAGGR_1586	TAGGR_3184	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.943
GAQ94406.1	GAQ95727.1	TAGGR_1586	TAGGR_3203	PAS domain S-box-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.449
GAQ94406.1	TAGGR_342	TAGGR_1586	TAGGR_342	PAS domain S-box-containing protein.	c-di-GMP-specific phosphodiesterase class I.	0.945
GAQ94656.1	GAQ94406.1	TAGGR_1841	TAGGR_1586	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.458
GAQ94656.1	GAQ94913.1	TAGGR_1841	TAGGR_11108	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.448
GAQ94656.1	GAQ95291.1	TAGGR_1841	TAGGR_2180	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.976

page 1 of 5

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About