STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_342c-di-GMP-specific phosphodiesterase class I. (360 aa)    
Predicted Functional Partners:
GAQ94375.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.984
GAQ94797.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.982
GAQ94406.1
PAS domain S-box-containing protein.
 0.951
GAQ94913.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 0.946
GAQ95423.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
  0.934
GAQ95727.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
  0.920
GAQ94656.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
  0.892
GAQ95291.1
PAS domain S-box-containing protein.
 
0.892
GAQ95223.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
 0.885
GAQ95709.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.839
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.