STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_348Geranylgeranyl reductase. (379 aa)    
Predicted Functional Partners:
TAGGR_374
Electron transfer flavoprotein beta subunit.
  
 
 0.949
TAGGR_373
Electron transfer flavoprotein alpha subunit.
  
 
 0.919
GAQ95309.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
 0.838
GAQ95503.1
Iron-sulfur cluster-binding protein.
    
  0.752
GAQ94103.1
Phytoene dehydrogenase-related protein.
 
 
 0.721
GAQ93979.1
4-hydroxybenzoate polyprenyltransferase; Belongs to the UbiA prenyltransferase family.
  
 
 0.717
GAQ94389.1
Magnesium chelatase subunit D.
  
  
 0.710
TAGGR_347
Nucleotide-binding universal stress protein, UspA family.
       0.661
TAGGR_345
BirA family transcriptional regulator, biotin operon repressor.
  
    0.655
TAGGR_344
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.654
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.