STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_349Protein TonB. (213 aa)    
Predicted Functional Partners:
GAQ94409.1
Biopolymer transport protein TolR.
  
 
 0.933
GAQ94408.1
Biopolymer transport protein TolQ.
 
 
 0.889
GAQ94403.1
Iron complex outermembrane recepter protein.
  
 
 0.865
GAQ94395.1
Outer membrane receptor proteins, mostly Fe transport.
 
 0.803
GAQ95408.1
Vitamin B12 transporter.
 
 0.799
GAQ94146.1
acetyl-CoA synthase.
    
  0.727
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
     
  0.685
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
  0.685
GAQ94181.1
Hypothetical protein.
 
    0.655
GAQ95115.1
Iron complex outermembrane recepter protein.
 
 
 
 0.647
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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