STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_349Protein TonB. (213 aa)    
Predicted Functional Partners:
GAQ94409.1
Biopolymer transport protein TolR.
  
 
 0.980
GAQ94408.1
Biopolymer transport protein TolQ.
 
 
 0.960
GAQ94403.1
Iron complex outermembrane recepter protein.
  
 
 0.952
GAQ95115.1
Iron complex outermembrane recepter protein.
 
 
 
 0.849
GAQ94107.1
TonB dependent receptor.
   
 
 0.830
GAQ94395.1
Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.750
GAQ95408.1
Vitamin B12 transporter.
 
 
 0.744
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
 0.704
GAQ94146.1
acetyl-CoA synthase.
    
  0.695
GAQ94411.1
TolB protein.
 
 
 
 0.652
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.