Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TAGGR_364ABC-2 type transport system ATP-binding protein. (281 aa)    
Predicted Functional Partners:
TAGGR_365
ABC-2 type transporter, NodJ family.
 
 
 0.974
GAQ95704.1
ABC-2 type transport system permease protein.
 
 
 0.955
GAQ93950.1
Lipooligosaccharide transport system permease protein.
 
 
 0.895
GAQ94286.1
ATP-binding cassette, subfamily B, MsbA.
  
 0.845
TAGGR_363
Ribonucleoside-diphosphate reductase alpha chain; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.773
atpC
F-type H+-transporting ATPase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.723
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.706
GAQ95702.1
ABC-2 type transport system permease protein.
 
 
 0.653
TAGGR_366
Two-component system, LytT family, sensor histidine kinase LytS.
       0.636
TAGGR_367
Two-component system, LytT family, response regulator.
       0.636
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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