STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_367Two-component system, LytT family, response regulator. (257 aa)    
Predicted Functional Partners:
TAGGR_366
Two-component system, LytT family, sensor histidine kinase LytS.
 
 0.984
GAQ94104.1
Histidine kinase.
 
 0.936
GAQ94007.1
Methyl-accepting chemotaxis protein.
    
 0.679
GAQ94873.1
Signal transduction histidine kinase.
 
  
 0.667
GAQ94653.1
PAS domain S-box-containing protein.
    
 0.654
TAGGR_365
ABC-2 type transporter, NodJ family.
       0.639
TAGGR_363
Ribonucleoside-diphosphate reductase alpha chain; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.636
TAGGR_364
ABC-2 type transport system ATP-binding protein.
       0.636
GAQ94875.1
Hypothetical protein.
    
 0.593
TAGGR_368
Carbon starvation protein.
 
   
 0.580
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.