STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_386Hydrogenase expression/formation protein HypE. (332 aa)    
Predicted Functional Partners:
GAQ94003.1
Hydrogenase expression/formation protein HypD.
 
 
 0.998
GAQ94651.1
Hydrogenase expression/formation protein HypC.
 
 
 0.991
GAQ94092.1
Hydrogenase maturation protein HypF.
 
 
 0.988
argH
Argininosuccinate lyase.
       0.784
TAGGR_385
Hypothetical protein.
       0.784
hypA
Hydrogenase nickel incorporation protein HypA/HybF; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.781
GAQ94826.1
Hydrogenase nickel incorporation protein HypB.
 
  
 0.766
TAGGR_388
23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.
       0.725
TAGGR_387
Peptidyl-prolyl cis-trans isomerase SurA.
       0.721
GAQ94445.1
Flagellar motor switch protein FliG.
    
   0.720
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.