STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_387Peptidyl-prolyl cis-trans isomerase SurA. (317 aa)    
Predicted Functional Partners:
TAGGR_388
23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family.
     
 0.780
argH
Argininosuccinate lyase.
       0.715
TAGGR_385
Hypothetical protein.
       0.715
TAGGR_386
Hydrogenase expression/formation protein HypE.
       0.715
TAGGR_380
LPS-assembly protein.
 
  
 0.637
GAQ94775.1
Outer membrane protein insertion porin family.
  
 
 0.604
TAGGR_383
Elongation factor G.
  
    0.518
GAQ94045.1
Outer membrane protein insertion porin family.
  
 
 0.486
GAQ95102.1
Outer membrane protein assembly factor BamD.
  
 
 0.483
TAGGR_382
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 
 0.482
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.