STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900162675_01968Unannotated protein. (421 aa)    
Predicted Functional Partners:
GCA_900162675_01967
Unannotated protein.
 
     0.946
GCA_900162675_01966
Unannotated protein.
 
   
 0.897
GCA_900162675_01965
Unannotated protein.
 
  
 0.894
GCA_900162675_03140
Unannotated protein.
   
 
 0.836
GCA_900162675_00389
Unannotated protein.
 
   
 0.747
GCA_900162675_00388
Unannotated protein.
 
  
 0.721
GCA_900162675_02212
Unannotated protein.
 
    0.697
GCA_900162675_02430
Unannotated protein.
   
 
 0.634
GCA_900162675_03139
Unannotated protein.
   
 
 0.634
GCA_900162675_02138
Unannotated protein.
    
   0.624
Your Current Organism:
Halomonas utahensis
NCBI taxonomy Id: 86177
Other names: DSM 3051, H. utahensis, Pseudomonas halophila, bacterium ES1D1, strain II
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.