Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFM01543.1Hypothetical protein. (664 aa)    
Predicted Functional Partners:
EFM01544.1
Hypothetical protein.
 
    0.873
EFM01542.1
GH3 auxin-responsive promoter; Pfam: PF03321.
       0.819
EFM01968.1
Hypothetical protein.
  
    0.767
EFM02227.1
Outer membrane protein, OMP85 family; Pfam: PF01103; InterPro: IPR000184.
  
     0.752
EFM02812.1
Hypothetical protein.
  
     0.738
EFM01541.1
Hypothetical protein.
       0.737
EFM01024.1
Hypothetical protein.
  
     0.720
EFM02210.1
Hypothetical protein.
  
     0.699
EFM01579.1
Permease, YjgP/YjgQ family; Pfam: PF03739; InterPro: IPR005495.
  
     0.696
EFM00913.1
Outer membrane protein, OMP85 family; Pfam: PF07244,PF01103; InterPro: IPR000184.
  
     0.696
Your Current Organism:
Prevotella marshii
NCBI taxonomy Id: 862515
Other names: P. marshii DSM 16973 = JCM 13450, Prevotella marshii DSM 16973, Prevotella marshii DSM 16973 = DSM 16973, Prevotella marshii DSM 16973 = JCM 13450, Prevotella marshii E9.34, Prevotella marshii JCM 13450
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