STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM26098.1Hypothetical protein; Pfam: PF04324. (145 aa)    
Predicted Functional Partners:
EFM25667.1
Hypothetical protein; Pfam: PF09084.
  
 
 0.530
phnA
Putative alkylphosphonate utilization operon protein PhnA; Pfam: PF08274.
       0.523
hydC
Hydrogenase, Fe-only; COG: COG4624; Pfam: PF00111,PF00037,PF02906,PF02256; InterPro: IPR013352.
    
  0.484
EFM25669.1
ABC transporter, ATP-binding protein; Pfam: PF00005; InterPro: IPR003439.
    
 0.479
EFM25668.1
ABC transporter, permease protein; Pfam: PF00528.
    
 0.473
EFM24816.1
Efflux ABC transporter, permease protein; Pfam: PF02687.
  
     0.430
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
     
 0.416
EFM26099.1
TrkA C-terminal domain protein; Pfam: PF02080.
       0.411
bcd2
Rubredoxin; COG: COG1960; Pfam: PF02771,PF02770,PF00441,PF00766,PF00301; InterPro: IPR013764.
     
 0.403
Your Current Organism:
Peptoniphilus duerdenii
NCBI taxonomy Id: 862517
Other names: P. duerdenii ATCC BAA-1640, Peptoniphilus duerdenii ATCC BAA-1640, Peptoniphilus duerdenii WAL 18896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.