STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM25931.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
EFM25928.1
Hypothetical protein.
 
    0.914
EFM25930.1
DNA (cytosine-5-)-methyltransferase; COG: COG0863; Pfam: PF02195,PF01555; InterPro: IPR002941; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.870
EFM25929.1
Hypothetical protein; Pfam: PF00438; 2.5.1.6.
 
     0.831
EFM25934.1
Putative phage terminase, large subunit; COG: COG4626; Pfam: PF03354; InterPro: IPR005021.
 
     0.793
EFM25938.1
Phage major capsid protein, HK97 family; COG: COG4653; Pfam: PF05065; InterPro: IPR006444.
 
    0.787
EFM25963.1
Recombinase; Pfam: PF07508; overlaps another CDS with the same product name.
 
    0.772
EFM25935.1
Phage portal protein, HK97 family; COG: COG4695; Pfam: PF04860; InterPro: IPR006427.
 
    0.757
EFM25915.1
Hypothetical protein.
  
     0.687
EFM25921.1
Hypothetical protein.
 
    0.674
EFM25433.1
AIG2-like family protein.
 
    0.664
Your Current Organism:
Peptoniphilus duerdenii
NCBI taxonomy Id: 862517
Other names: P. duerdenii ATCC BAA-1640, Peptoniphilus duerdenii ATCC BAA-1640, Peptoniphilus duerdenii WAL 18896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.