Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFM25591.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
ald
Alanine dehydrogenase; COG: COG0686; Pfam: PF05222,PF01262; InterPro: IPR008141; Belongs to the AlaDH/PNT family.
       0.773
EFM25593.1
Hypothetical protein.
       0.773
EFM25594.1
Hypothetical protein; COG: COG1253; Pfam: PF01595,PF00571,PF03471; InterPro: IPR002550.
       0.422
Your Current Organism:
Peptoniphilus duerdenii
NCBI taxonomy Id: 862517
Other names: P. duerdenii ATCC BAA-1640, Peptoniphilus duerdenii ATCC BAA-1640, Peptoniphilus duerdenii WAL 18896
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