STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFM25058.1Hypothetical protein. (737 aa)    
Predicted Functional Partners:
dcm
DNA (cytosine-5-)-methyltransferase; COG: COG0270; Pfam: PF00145; InterPro: IPR001525.
 
     0.781
EFM26083.1
ABC-2 type transporter; Pfam: PF01061.
  
     0.703
EFM25054.1
Copper amine oxidase domain protein; Pfam: PF07833.
 
    0.696
EFM25055.1
Hypothetical protein.
 
     0.689
EFM26082.1
Hypothetical protein.
  
     0.661
topB2
DNA topoisomerase; COG: COG0550; Pfam: PF01751,PF01131; InterPro: IPR005738.
       0.656
EFM25059.1
Hypothetical protein; COG: COG4646.
 
   
 0.651
EFM25167.1
Hypothetical protein.
 
     0.648
EFM25730.1
Phosphorylase family; Pfam: PF01048.
  
     0.620
EFM25750.1
Hypothetical protein.
  
     0.601
Your Current Organism:
Peptoniphilus duerdenii
NCBI taxonomy Id: 862517
Other names: P. duerdenii ATCC BAA-1640, Peptoniphilus duerdenii ATCC BAA-1640, Peptoniphilus duerdenii WAL 18896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.