Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFM24797.1Hypothetical protein. (70 aa)    
Predicted Functional Partners:
EFM24795.1
Hypothetical protein; Pfam: PF07211; InterPro: IPR009859.
       0.598
EFM24796.1
Hypothetical protein; 6.3.2.6.
       0.598
bet
Phage recombination protein Bet; Pfam: PF03837; InterPro: IPR004590.
       0.594
EFM24798.1
Hypothetical protein.
       0.539
EFM24789.1
Hypothetical protein.
       0.482
EFM24790.1
Hypothetical protein; 1.7.1.4.
       0.482
EFM24791.1
Hypothetical protein; Pfam: PF06356; InterPro: IPR009414.
       0.482
EFM24792.1
Hypothetical protein.
       0.482
EFM24793.1
DnaD domain protein.
       0.482
EFM24799.1
Hypothetical protein.
       0.468
Your Current Organism:
Peptoniphilus duerdenii
NCBI taxonomy Id: 862517
Other names: P. duerdenii ATCC BAA-1640, Peptoniphilus duerdenii ATCC BAA-1640, Peptoniphilus duerdenii WAL 18896
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