E6O75_ATG07334 protein (Venturia nashicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E6O75_ATG07334

Golgi reassembly stacking protein-like protein. (353 aa)

Predicted Functional Partners:

E6O75_ATG08162

0.983

E6O75_ATG08209

0.929

E6O75_ATG10927

0.907

E6O75_ATG07901

0.895

E6O75_ATG07418

0.868

E6O75_ATG08165

0.844

E6O75_ATG09957

0.842

E6O75_ATG04582

0.842

E6O75_ATG07700

0.828

E6O75_ATG10852

0.821

Your Current Organism:

Venturia nashicola

NCBI taxonomy Id: 86259
Other names: V. nashicola

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E6O75_ATG04582	E6O75_ATG07334	A0A4Z1P8D0	A0A4Z1NZB6	Uncharacterized protein.	Golgi reassembly stacking protein-like protein.	0.842
E6O75_ATG04582	E6O75_ATG07418	A0A4Z1P8D0	A0A4Z1PES9	Uncharacterized protein.	GTP-binding protein ypt1.	0.824
E6O75_ATG04582	E6O75_ATG08165	A0A4Z1P8D0	A0A4Z1P626	Uncharacterized protein.	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	0.730
E6O75_ATG04582	E6O75_ATG08209	A0A4Z1P8D0	A0A4Z1P9I9	Uncharacterized protein.	Intracellular protein transport protein-like protein.	0.758
E6O75_ATG04582	E6O75_ATG09957	A0A4Z1P8D0	A0A4Z1NEI9	Uncharacterized protein.	Putative ER-golgi SNARE complex subunit.	0.835
E6O75_ATG04582	E6O75_ATG10852	A0A4Z1P8D0	A0A4Z1P3L8	Uncharacterized protein.	M-phase inducer phosphatase.	0.979
E6O75_ATG04582	E6O75_ATG10927	A0A4Z1P8D0	A0A4Z1P0N3	Uncharacterized protein.	COPII component protein.	0.979
E6O75_ATG07334	E6O75_ATG04582	A0A4Z1NZB6	A0A4Z1P8D0	Golgi reassembly stacking protein-like protein.	Uncharacterized protein.	0.842
E6O75_ATG07334	E6O75_ATG07418	A0A4Z1NZB6	A0A4Z1PES9	Golgi reassembly stacking protein-like protein.	GTP-binding protein ypt1.	0.868
E6O75_ATG07334	E6O75_ATG07700	A0A4Z1NZB6	A0A4Z1P6V8	Golgi reassembly stacking protein-like protein.	Ras-domain-containing protein.	0.828
E6O75_ATG07334	E6O75_ATG07901	A0A4Z1NZB6	A0A4Z1NLG4	Golgi reassembly stacking protein-like protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.895
E6O75_ATG07334	E6O75_ATG08162	A0A4Z1NZB6	A0A4Z1NNV9	Golgi reassembly stacking protein-like protein.	Serine/threonine-protein kinase.	0.983
E6O75_ATG07334	E6O75_ATG08165	A0A4Z1NZB6	A0A4Z1P626	Golgi reassembly stacking protein-like protein.	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	0.844
E6O75_ATG07334	E6O75_ATG08209	A0A4Z1NZB6	A0A4Z1P9I9	Golgi reassembly stacking protein-like protein.	Intracellular protein transport protein-like protein.	0.929
E6O75_ATG07334	E6O75_ATG09957	A0A4Z1NZB6	A0A4Z1NEI9	Golgi reassembly stacking protein-like protein.	Putative ER-golgi SNARE complex subunit.	0.842
E6O75_ATG07334	E6O75_ATG10852	A0A4Z1NZB6	A0A4Z1P3L8	Golgi reassembly stacking protein-like protein.	M-phase inducer phosphatase.	0.821
E6O75_ATG07334	E6O75_ATG10927	A0A4Z1NZB6	A0A4Z1P0N3	Golgi reassembly stacking protein-like protein.	COPII component protein.	0.907
E6O75_ATG07418	E6O75_ATG04582	A0A4Z1PES9	A0A4Z1P8D0	GTP-binding protein ypt1.	Uncharacterized protein.	0.824
E6O75_ATG07418	E6O75_ATG07334	A0A4Z1PES9	A0A4Z1NZB6	GTP-binding protein ypt1.	Golgi reassembly stacking protein-like protein.	0.868
E6O75_ATG07418	E6O75_ATG07700	A0A4Z1PES9	A0A4Z1P6V8	GTP-binding protein ypt1.	Ras-domain-containing protein.	0.784