E6O75_ATG09313 protein (Venturia nashicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

E6O75_ATG09313

HIT domain-containing protein. (134 aa)

Predicted Functional Partners:

E6O75_ATG05006

0.851

E6O75_ATG01340

0.851

E6O75_ATG04038

0.849

E6O75_ATG00023

0.780

E6O75_ATG08115

0.768

E6O75_ATG05462

0.753

E6O75_ATG10284

0.748

E6O75_ATG07254

0.725

E6O75_ATG00240

0.725

E6O75_ATG03557

0.691

Your Current Organism:

Venturia nashicola

NCBI taxonomy Id: 86259
Other names: V. nashicola

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E6O75_ATG00023	E6O75_ATG03557	A0A4Z1PFA2	A0A4Z1PSA1	Serine threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.872
E6O75_ATG00023	E6O75_ATG04038	A0A4Z1PFA2	A0A4Z1P6N8	Serine threonine protein kinase; Belongs to the protein kinase superfamily.	TATA-box binding protein.	0.993
E6O75_ATG00023	E6O75_ATG05462	A0A4Z1PFA2	A0A4Z1P0G1	Serine threonine protein kinase; Belongs to the protein kinase superfamily.	CDK-activating kinase assembly factor MAT1.	0.999
E6O75_ATG00023	E6O75_ATG09313	A0A4Z1PFA2	A0A4Z1NZI6	Serine threonine protein kinase; Belongs to the protein kinase superfamily.	HIT domain-containing protein.	0.780
E6O75_ATG00023	E6O75_ATG10284	A0A4Z1PFA2	A0A4Z1NRN7	Serine threonine protein kinase; Belongs to the protein kinase superfamily.	BTB domain-containing protein.	0.847
E6O75_ATG00240	E6O75_ATG03557	A0A4Z1PET9	A0A4Z1PSA1	Uncharacterized protein.	Uncharacterized protein.	0.629
E6O75_ATG00240	E6O75_ATG04038	A0A4Z1PET9	A0A4Z1P6N8	Uncharacterized protein.	TATA-box binding protein.	0.764
E6O75_ATG00240	E6O75_ATG08115	A0A4Z1PET9	A0A4Z1P5Y5	Uncharacterized protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.723
E6O75_ATG00240	E6O75_ATG09313	A0A4Z1PET9	A0A4Z1NZI6	Uncharacterized protein.	HIT domain-containing protein.	0.725
E6O75_ATG00240	E6O75_ATG10284	A0A4Z1PET9	A0A4Z1NRN7	Uncharacterized protein.	BTB domain-containing protein.	0.764
E6O75_ATG01340	E6O75_ATG05006	A0A4Z1PU81	A0A4Z1P9K5	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	Putative mitochondrial 2-oxoglutarate/malate carrier protein.	0.962
E6O75_ATG01340	E6O75_ATG09313	A0A4Z1PU81	A0A4Z1NZI6	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	HIT domain-containing protein.	0.851
E6O75_ATG03557	E6O75_ATG00023	A0A4Z1PSA1	A0A4Z1PFA2	Uncharacterized protein.	Serine threonine protein kinase; Belongs to the protein kinase superfamily.	0.872
E6O75_ATG03557	E6O75_ATG00240	A0A4Z1PSA1	A0A4Z1PET9	Uncharacterized protein.	Uncharacterized protein.	0.629
E6O75_ATG03557	E6O75_ATG04038	A0A4Z1PSA1	A0A4Z1P6N8	Uncharacterized protein.	TATA-box binding protein.	0.974
E6O75_ATG03557	E6O75_ATG05462	A0A4Z1PSA1	A0A4Z1P0G1	Uncharacterized protein.	CDK-activating kinase assembly factor MAT1.	0.966
E6O75_ATG03557	E6O75_ATG07254	A0A4Z1PSA1	A0A4Z1NZ49	Uncharacterized protein.	Hmg box-containing protein.	0.631
E6O75_ATG03557	E6O75_ATG08115	A0A4Z1PSA1	A0A4Z1P5Y5	Uncharacterized protein.	RNA polymerase I-specific transcription initiation factor RRN3.	0.971
E6O75_ATG03557	E6O75_ATG09313	A0A4Z1PSA1	A0A4Z1NZI6	Uncharacterized protein.	HIT domain-containing protein.	0.691
E6O75_ATG03557	E6O75_ATG10284	A0A4Z1PSA1	A0A4Z1NRN7	Uncharacterized protein.	BTB domain-containing protein.	0.956