STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
E6O75_ATG08101Gb. (318 aa)    
Predicted Functional Partners:
E6O75_ATG01690
RNA-binding domain-containing protein.
  
 
 
0.790
E6O75_ATG11394
WD40 repeat-like protein.
    
  0.771
E6O75_ATG11559
Pre-mrna splicing factor atp-dependent rna helicase prp16.
    
  0.764
E6O75_ATG08222
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.761
E6O75_ATG09740
Pre-mRNA-splicing factor SLU7.
    
 0.749
E6O75_ATG06934
Gb.
    
 0.740
E6O75_ATG10008
Nuclear cap-binding protein subunit 2.
    
 0.731
E6O75_ATG06685
MIF4G-like type 3.
    
 0.728
E6O75_ATG11671
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.702
E6O75_ATG04403
Putative DNA-directed RNA polymerase II chain RPB10.
    
  0.687
Your Current Organism:
Venturia nashicola
NCBI taxonomy Id: 86259
Other names: V. nashicola
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.