STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0075Putative periplasmic substrate-binding transport protein. (513 aa)    
Predicted Functional Partners:
dppC
Putative didpeptide permease component of ABC transporter.
 
 0.985
oppB_1
Oligopeptide permease.
 
 0.985
BMS_3231
Putative dipeptide transport system permease protein.
 
 0.982
BMS_3002
Putative ABC transporter, permease protein.
 
 0.966
BMS_0503
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
  
 
  0.905
dppB
Putative dipeptide transport system permease protein.
 
 
 0.870
BMS_0076
Putative ribosomal protein L11 methyltransferase.
       0.773
BMS_0077
Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.773
BMS_3001
Putative oligopeptide transport system permease protein.
 
 
 0.696
dppF
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.674
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.