STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0093Conserved hypothetical protein. (224 aa)    
Predicted Functional Partners:
BMS_0092
Weak similarity to glycosyl transferases.
  
  
 0.814
BMS_0090
Conserved hypothetical protein; Shows weak similarity to proteins involved in surface polysaccharide biosynthesis so may be a glycosyl transferase.
  
  
 0.571
fliS
Flagellar protein FliS.
       0.519
BMS_0096
Putative flagellar hook associated protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
       0.507
BMS_0087
Putative two-component response regulator.
  
    0.485
recN
Putative DNA repair protein; May be involved in recombinational repair of damaged DNA.
       0.477
nadK
Putative inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase); Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
       0.477
BMS_0088
Putative two-component sensor kinase; Possible downstream translational starts.
       0.477
BMS_0089
Hypothetical protein.
       0.477
wcaJ
Putative UDP-glucose lipid carrier transferase.
     
 0.477
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.