STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0140Putative outer membrane protein. (954 aa)    
Predicted Functional Partners:
BMS_0139
Putative membrane protein.
 
   
 0.903
BMS_2009
Putative exported protein.
  
 
 0.855
BMS_3364
Putative comtepence-related protein.
 
 
 0.850
BMS_0578
Putative exported protein.
 
  
 0.801
rseP
Putative transmembane regulator of protease.
 
  
 0.783
BMS_0137
Hypothetical protein.
       0.773
BMS_2154
Hypothetical protein.
  
 
 0.767
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
    0.717
tsf
Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.656
BMS_0575
Putative ABC transport system, membrane protein.
 
   
 0.654
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.