STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0149Putative long-chain fatty-acid CoA ligase. (606 aa)    
Predicted Functional Partners:
fadD
long-chain-fatty-acid--CoA-ligase.
  
 
0.915
BMS_3245
Putative exported protein.
     
 0.823
BMS_1649
Putative AMP-binding hydrolase enzyme; Similar to C-terminus of Chlorobium tepidum menh thioesterase, menaquinone synthesis gene. UniProt:Q8KBE3 (EMBL:AE006470) (275 aa) fasta scores: E()=8.5e-20, 31.538% id in 260 aa. May be a fusion protein.
 
 
 0.784
BMS_1450
Putative two-component sensor kinase (pseudogene); HMMPfam hit to PF02518, ATP-binding region, ATPase-like, score 4.3e-29.
  
 
 0.713
BMS_1723
Similar to Megasphaera elsdenii acyl-coa dehydrogenase, short-chain specific (ec 1.3.99.2) (scad) (butyryl-coa dehydrogenase) (bcad). UniProt:Q06319 (EMBL:L04528) (383 aa) fasta scores: E()=2.4e-20, 31.443% id in 388 aa, and to Leptospira interrogans acyl-coa dehydrogenase (ec 1.3.99.3). UniProt:Q8F2X4 (EMBL:AE010300) (586 aa) fasta scores: E()=1.7e-38, 31.903% id in 536 aa.
  
 0.681
bcd
acyl-CoA dehydrogenase, short-chain specific.
  
 0.681
BMS_3038
Putative acyl-CoA dehydrogenase oxidoreductase protein.
  
 0.681
BMS_3396
Putative acyl-CoA dehydrogenase.
  
 0.681
rplE
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.662
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.633
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.