STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0170Putative dTDP-4-dehydrorhamnose reductase. (332 aa)    
Predicted Functional Partners:
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.988
rfbC
dTDP-D-glucose 4,6-dehydratase.
 
 
 0.984
rmlA
TDP-glucose pyrophosphorylase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.946
BMS_1315
Putative dNTP-hexose dehydratase-epimerase.
 
 0.879
wcaJ
Putative UDP-glucose lipid carrier transferase.
 
  
 0.860
BMS_0381
Putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase.
  
  
 0.650
fliC4
Flagellin subunit; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.539
BMS_0356
Possible sugar nucleotide epimerase/dehydratase.
  
  
 0.492
BMS_3389
Putative nucleotidyl transferase.
  
  
 0.477
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
  
    0.456
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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