STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0202Putative beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)    
Predicted Functional Partners:
fadB
Fatty acid oxidation complex subunit alpha.
 
 0.999
bcd
acyl-CoA dehydrogenase, short-chain specific.
  
 0.948
BMS_3396
Putative acyl-CoA dehydrogenase.
  
 0.948
BMS_3270
Putative propionyl-CoA carboxylase.
  
 0.936
BMS_1991
Putative hydroxymethylglutaryl-CoA lyase.
  
 
 0.935
BMS_1367
Putative acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.921
BMS_1822
Putative thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.916
hbdA
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 
 
 0.915
iolA
Malonic semialdehyde oxidative decarboxylase.
   
 0.913
BMS_2004
3-hydroxybutyryl-CoA dehydrogenase (pseudogene); HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 2.5e-09; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.912
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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