STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctaEPutative transmembrane cytochrome oxidase subunit. (211 aa)    
Predicted Functional Partners:
BMS_0219
Putative cytochrome c oxidase subunit II.
 
 0.999
ctaD
Cytochrome c oxidase polypeptide I; Belongs to the heme-copper respiratory oxidase family.
 0.999
ctaB
Putative protoheme IX farnesyltransferase (heme O synthase); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.998
BMS_1399
Putative cytochrome c.
  
 0.981
BMS_2250
Putative NADH dehydrogenase I chain C/D.
   
 
 0.977
BMS_0221
Putative cytochrome O ubiquinol oxidase.
  
  
  0.973
BMS_0207
Putative ubiquinol-cytochrome C reductase iron-sulfur subunit.
 
 
 0.965
BMS_0208
Putative ubiquinol-cytochrome C reductase cytochrome B subunit.
 
 
 0.957
nuoM
Putative NADH-ubiquinone oxidoreductase subunit M.
  
 
 0.952
atpB
ATP synthase A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
   
 
 0.949
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.