Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0271Putative membrane protein. (170 aa)    
Predicted Functional Partners:
BMS_0273
Putative transport related membrane protein.
 
   0.950
BMS_1382
Putative motility membrane protein.
 
   0.827
BMS_0272
Putative membrane protein.
       0.787
BMS_1271
Putative general secretion pathway protein C.
  
     0.739
BMS_0267
Putative membrane protein.
  
     0.738
BMS_0481
Putative UDP-glucose 4-epimerase.
  
     0.718
BMS_1386
Hypothetical protein.
 
   0.681
BMS_0482
Putative acyltransferase.
  
    0.627
BMS_1997
Putative beta-lactamase family protein.
  
     0.601
BMS_2173
Conserved hypothetical protein.
  
     0.563
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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