STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0290Hypothetical protein. (167 aa)    
Predicted Functional Partners:
BMS_0289
Putative vitamin B12 receptor protein.
   
 
 0.907
BMS_0292
Putative iron(III) transport system, ATP-binding protein.
  
  
 0.803
BMS_0291
Putative transport system lipoprotein.
  
  
 0.801
BMS_0293
Putative iron ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.800
BMS_0523
Putative TonB-dependent outer membrane receptor.
  
 
 0.784
BMS_2065
Putative outer membrane protein.
  
 
 0.559
BMS_0271
Putative membrane protein.
  
   0.499
BMS_0272
Putative membrane protein.
  
   0.499
BMS_1027
Putative biopolymer transport protein.
  
   0.499
BMS_1380
Putative motility membrane protein.
  
   0.499
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.