STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0292Putative iron(III) transport system, ATP-binding protein. (257 aa)    
Predicted Functional Partners:
BMS_0293
Putative iron ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.996
hmuU
Transmembrane permease component of haem ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.981
BMS_0291
Putative transport system lipoprotein.
 
 
 0.971
btuF
Putative vitamin B12-binding protein precursor.
 
 
 0.854
BMS_0290
Hypothetical protein.
  
  
 0.803
BMS_0289
Putative vitamin B12 receptor protein.
       0.785
hmuT
Hemin-binding periplasmic protein.
 
 
 0.736
BMS_2505
Putative ABC transporter, ATP-binding/permease protein.
  
  
 0.679
BMS_2506
Putative ABC transport system, membrane protein.
  
  
 0.635
BMS_1351
Putative ABC transport system, ATP-binding protein.
  
  
0.565
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.