STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0302Putative ABC transport system, membrane protein. (341 aa)    
Predicted Functional Partners:
BMS_0301
Putative ABC transport system, membrane protein.
  
 0.985
BMS_0503
Putative ATP-binding component of ABC transporter; Belongs to the ABC transporter superfamily.
  
 0.981
dppD
Putative dipeptide ABC transporter component; Belongs to the ABC transporter superfamily.
   
 0.979
dppF
Dipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
   
 0.976
BMS_0300
ABC transport system, substrate-binding lipoprotein.
     0.922
oppB_1
Oligopeptide permease.
   
 0.846
dppB
Putative dipeptide transport system permease protein.
   
 0.827
BMS_3002
Putative ABC transporter, permease protein.
   
 0.782
BMS_0303
Putative exported protein.
       0.542
BMS_0299
Putative membrane protein.
       0.435
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.