STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0316Putative aldose epimerase. (293 aa)    
Predicted Functional Partners:
BMS_1223
Putative 2-oxoisovalerate dehydrogenase, alpha and beta subunits.
  
  
 0.569
pdhAB
Putative pyruvate (oxoisovalerate) Dehydrogenase, alpha-beta fusion; Similar to C-terminus of Bacillus stearothermophilus (Geobacillus stearothermophilus) PdhB pyruvate dehydrogenase E1 component subunit beta (ec 1.2.4.1). UniProt:P21874 (EMBL:X53560) (324 aa) fasta scores: E()=8.4e-39, 39.296% id in 341 aa.
  
  
 0.569
BMS_0315
Putative transmembrane Na+/H+ antiporter.
       0.551
maeB
NADP-dependent malate dehydrogenase (decarboxylating).
     
 0.477
BMS_2102
Putative D-alanyl-D-alanine carboxypeptidase precursor.
  
    0.466
BMS_2612
Putative peptidoglycan biosynthesis-related.
  
    0.466
pmi
Mannose-6-phosphate isomerase.
 
   
 0.452
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.442
exoB
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 0.429
BMS_0616
Conserved hypothetical protein; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.417
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.