STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0385Putative 4-amino-4-deoxy-l-arabinose lipid A transferase. (477 aa)    
Predicted Functional Partners:
rfbG
CDP-glucose 4,6-dehydratase.
  
    0.788
prt
Paratose synthase.
  
    0.788
rfbH
Putative dehydratase RfbH; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.782
BMS_0381
Putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase.
       0.778
BMS_0384
Putative membrane protein.
       0.773
rfbE
DNTP-hexose dehydratase-epimerase.
  
    0.772
wcaJ
Putative UDP-glucose lipid carrier transferase.
       0.610
BMS_0378
Putative glycosyl transferase protein.
  
    0.599
BMS_0374
Putative polysaccharide biosynthesis protein.
       0.543
BMS_0375
Putative glycosyltransferase.
       0.535
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.