STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0441Putative integral membrane protein. (178 aa)    
Predicted Functional Partners:
hemF
Coproporphyrinogen III oxidase, aerobic.
 
  
 0.951
hemN
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
    
 0.920
BMS_0442
Putative phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.559
msrB-2
Putative oxidoreductase; Belongs to the MsrB Met sulfoxide reductase family.
       0.538
BMS_0282
Putative transport-related, membrane protein.
  
    0.465
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.449
hemE
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
   
 0.441
pilD
Putative type IV prepilin signal peptidase.
   
    0.424
BMS_2662
Putative glutathione synthetase.
  
     0.419
BMS_2529
Hypothetical protein; Belongs to the UPF0250 family.
 
     0.414
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.