Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0465Conserved hypothetical protein. (167 aa)    
Predicted Functional Partners:
BMS_0466
Putative exported protein.
 
     0.945
BMS_0464
Putative membrane protein.
    0.869
BMS_0463
Putative lysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
  
 0.659
npdA
NAD-dependent deacetylase (Regulatory protein SIR2 homolog); Belongs to the sirtuin family. Class III subfamily.
  
    0.592
BMS_1868
Putative aminotransferase.
  
 
 0.548
BMS_2301
Hypothetical protein.
   
    0.522
BMS_3217
Conserved hypothetical lipoprotein.
    0.518
motA
Putative chemotaxis MotA protein.
    
   0.465
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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