STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0527Putative siderophore biosynthesis protein IucB. (332 aa)    
Predicted Functional Partners:
iucD
Putative siderophore biosynthesis protein IucD.
 
 0.999
BMS_0528
Putative siderophore biosynthesis protein.
 
 0.999
iucC
Putative siderophore biosynthesis protein IucC.
  
 0.995
BMS_0529
Putative transport-related membrane protein.
 
   
 0.826
BMS_0523
Putative TonB-dependent outer membrane receptor.
     
 0.822
BMS_0524
Hypothetical protein.
       0.773
rnc
Ribonuclease III (RNase III); Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.614
BMS_0530
Putative exported protein.
       0.613
BMS_0522
Putative exported protein.
       0.532
BMS_2889
Putative exported protein.
 
    0.467
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.