STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0535Putative membrane protein. (1039 aa)    
Predicted Functional Partners:
BMS_2854
Putative regulatory protein.
  
 
 0.807
BMS_1518
Putative histidine kinase/response regulator fusion protein.
  
 
 0.796
BMS_0536
Putative membrane protein.
       0.705
BMS_2633
Putative chemotactic response, glutamate methyltransferase fusion protein.
  
 
 0.672
murJ
Putative membrane protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.596
cheA
Chemotaxis two-component sensor kinase.
  
 
 0.587
cheW
Putative chemotaxis protein.
  
 
 0.578
cheW-2
Positive regulator of CheA protein activity.
  
 
 0.578
BMS_0534
Putative membrane protein.
       0.518
BMS_2496
Putative histidine kinase/response regulator fusion protein.
  
 
 0.516
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.