STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0582Putative oxidoreductase. (314 aa)    
Predicted Functional Partners:
BMS_0411
Putative DegT family aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.920
BMS_0583
Putative lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
     0.913
lpxK
Putative tetraacyldisaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.841
BMS_3104
Putative pilin glycosylation protein.
 
  
 0.838
lpxA
acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.822
bplF
Lipopolysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.811
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
     0.806
BMS_3122
Putative pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.786
fabZ
(3R)-hydroxymyristol-[acyl carrier protein] dehydratase.
       0.753
BMS_3123
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.745
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.