STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolAMalonic semialdehyde oxidative decarboxylase. (490 aa)    
Predicted Functional Partners:
acs
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
  
 0.952
fadB
Fatty acid oxidation complex subunit alpha.
  
 0.931
aldH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 
0.927
BMS_1870
Putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.914
BMS_0202
Putative beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.913
BMS_1367
Putative acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.913
BMS_1822
Putative thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.913
BMS_2004
3-hydroxybutyryl-CoA dehydrogenase (pseudogene); HMMPfam hit to PF00725, 3-hydroxyacyl-CoA dehydrogenase, C-terminal, score 2.5e-09; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.913
BMS_2765
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.913
bcd
acyl-CoA dehydrogenase, short-chain specific.
   
 
 0.913
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.