Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_0709Putative membrane protein. (241 aa)    
Predicted Functional Partners:
BMS_0708
Putative ABC transporter ATP-binding protein.
 
 0.977
BMS_0710
Putative membrane protein.
 
  
 0.966
BMS_0711
Putative membrane protein.
       0.773
BMS_0712
Putative membrane protein.
       0.773
BMS_0124
Putative pilus-related ABC transporter ATP-binding subunit.
 
 
 0.706
BMS_1357
Putative ABC transporter, ATP-binding protein.
 
 0.639
BMS_3069
ABC transport system, ATP-binding protein.
  
 
 0.573
BMS_2727
Putative putrescine transport ATP-binding protein.
  
 
 0.569
BMS_0707
DHH family protein.
       0.536
tdk
Thymidine kinase.
       0.444
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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