STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0715Putative sugar kinase. (335 aa)    
Predicted Functional Partners:
BMS_0398
Putative phosphoheptose isomerase.
 
 
 0.983
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
 
 0.980
BMS_1935
Putative D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase.
 
 
 0.980
BMS_0716
Hypothetical protein.
       0.789
hpt
Putative phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
       0.773
BMS_0381
Putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase.
  
  
 0.687
rfbC
dTDP-D-glucose 4,6-dehydratase.
  
    0.676
tdk
Thymidine kinase.
       0.566
BMS_3389
Putative nucleotidyl transferase.
 
  
 0.477
BMS_0710
Putative membrane protein.
       0.451
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.