Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
BMS_0726Putative membrane protein. (533 aa)    
Predicted Functional Partners:
BMS_0727
Putative lipoprotein.
       0.773
BMS_0222
Hypothetical protein.
 
   
 0.721
BMS_1855
Conserved hypothetical protein.
  
     0.714
BMS_1425
Putative exported protein.
  
     0.713
pal
Peptidoglycan-associated lipoprotein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
     
 0.701
BMS_1619
Putative hemagglutinin/hemolysin protein; Codons 330 to 2490 are similar to codons 125 to 2300 of Staphylococcus epidermidis (strain ATCC 12228) streptococcal hemagglutinin protein. UniProt:Q8CMU7 (EMBL:AE015929) (2310 aa) fasta scores: E()=1e-27, 19.603% id in 2168 aa, and codons 595 to 1830 are similar to codon 125 to codon 1370 of Rhodopirellula baltica probable surface-associated protein CshA. UniProt:Q7UY66 (EMBL:BX294134) (1543 aa) fasta scores: E()=6.7e-44, 25.792% id in 1295 aa.
 
     0.688
BMS_0210
Putative cytochrome-related protein.
  
     0.685
BMS_0728
Putative membrane protein.
       0.685
BMS_0267
Putative membrane protein.
  
     0.668
BMS_2074
Putative membrane protein.
  
    0.657
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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