Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BMS_0771Putative integrase; Belongs to the 'phage' integrase family. (399 aa)    
Predicted Functional Partners:
xerC
Putative integrase/tyrosine recombinase; Belongs to the 'phage' integrase family.
  
   
 0.756
xerD
Putative integrase/tyrosine recombinase; Belongs to the 'phage' integrase family.
  
   
 0.755
BMS_0770
Conserved hypothetical protein.
       0.576
BMS_2693
Putative prephenate dehydrogenase.
  
    0.557
ftsK
DNA translocase; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.548
BMS_0772
Hypothetical protein.
       0.547
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.546
BMS_1794
Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.535
BMS_3141
Putative O-antigen export ABC transporter, ATP-binding protein.
  
    0.484
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
   
 0.461
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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