Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_0791Putative type I restriction enzyme specificity protein. (412 aa)    
Predicted Functional Partners:
BMS_0790
Putative type I restriction enzyme modification protein.
 
 
 0.999
BMS_0792
Putative type I restriction enzyme; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.990
BMS_0793
Conserved hypothetical protein.
 
    0.939
BMS_0794
Putative membrane protein.
       0.746
BMS_0795
Conserved hypothetical protein.
       0.743
BMS_0789
Putative phage protein.
  
    0.705
BMS_1783
Hypothetical protein.
  
    0.627
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.580
BMS_3440
Putative ATP synthase subunit B'; Belongs to the ATPase B chain family.
   
 
 0.534
BMS_0787
Conserved hypothetical protein.
       0.459
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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