STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumCFumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (465 aa)    
Predicted Functional Partners:
BMS_0474
Putative succinate dehydrogenase.
 
 0.980
maeB
NADP-dependent malate dehydrogenase (decarboxylating).
  
 
 0.976
BMS_2197
Fumarate reductase.
 
 0.975
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
 0.974
BMS_0475
Putative succinate dehydrogenase iron-sulfur protein.
  
 0.957
BMS_2198
Fumarate reductase iron-sulfur protein.
  
 0.957
gltA
Putative citrate synthase I; Belongs to the citrate synthase family.
   
 0.928
BMS_0473
Fumarate reductase transmembrane cytochrome b subunit.
     
  0.900
BMS_2196
Putative cytochrome B subunit.
     
  0.900
BMS_2649
Putative aspartate aminotransferase.
    
 0.826
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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