STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0894Putative exported protein; Belongs to the UPF0312 family. (180 aa)    
Predicted Functional Partners:
BMS_0895
Conserved hypothetical protein; Belongs to the pirin family.
     
 0.753
recQ
ATP-dependent DNA helicase.
       0.676
BMS_0893
Putative LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.545
BMS_0988
Hypothetical protein.
  
     0.544
BMS_0892
Putative exported protein.
       0.541
BMS_1391
Putative membrane protein.
  
     0.515
BMS_1827
Putative membrane protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
     0.433
BMS_1478
Hypothetical protein.
  
     0.417
BMS_3032
Putative membrane protein.
  
     0.401
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.