STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMS_0917Putative dienelactone hydrolase family protein. (258 aa)    
Predicted Functional Partners:
BMS_0918
Putative membrane protein.
       0.727
BMS_0919
Putative ECF-tyype sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.727
BMS_0916
Putative carbonic anhydrase.
  
    0.723
gcvP
Glycine dehydrogenase (decarboxylating).
  
    0.629
BMS_0920
Putative exported protein.
     
 0.516
BMS_0914
Putative ABC transporter, substrate-binding lipoprotein; Belongs to the bacterial solute-binding protein 9 family.
       0.486
BMS_0912
Putative ABC transport system, ATP-binding protein.
       0.468
BMS_0913
Putative ABC transport system, ATP-binding protein.
       0.468
BMS_0915
Putative exported protein.
       0.468
hmpA
Putative flavohemoprotein; Belongs to the globin family.
      
 0.404
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.