Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_0922Conserved hypothetical protein. (375 aa)    
Predicted Functional Partners:
icd
Putative isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
       0.572
BMS_1748
Putative conserved hypothetical protein.
  
     0.533
BMS_0929
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.522
BMS_0923
Hypothetical protein.
       0.506
BMS_0924
Hypothetical protein.
       0.506
BMS_0925
Putative exported protein.
       0.506
BMS_0926
Putative AcrB/AcrD/AcrF family efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.506
BMS_0927
Putative membrane protein.
       0.506
BMS_0930
Conserved hypothetical protein.
       0.499
astA
Arginine N-succinyltransferase.
  
     0.498
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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