cspE protein (Halobacteriovorax marinus) - STRING interaction network

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Score

cspE

Cold shock-like protein. (64 aa)

Predicted Functional Partners:

rhlE

0.831

rplW

0.826

rpsQ

0.792

rpsL

0.792

rplX

0.772

BMS_0967

0.766

rpsS

0.757

rpsK

0.739

rplB

0.727

rpsE

0.726

Your Current Organism:

Halobacteriovorax marinus

NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS_0967	cspE	BMS_0967	BMS_0946	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	Cold shock-like protein.	0.766
BMS_0967	rhlE	BMS_0967	BMS_0947	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.920
BMS_0967	rplB	BMS_0967	BMS_3298	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.851
BMS_0967	rplW	BMS_0967	BMS_3299	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.817
BMS_0967	rplX	BMS_0967	BMS_3289	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.629
BMS_0967	rpsE	BMS_0967	BMS_3283	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.794
BMS_0967	rpsK	BMS_0967	BMS_3275	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.485
BMS_0967	rpsL	BMS_0967	BMS_3308	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.487
BMS_0967	rpsQ	BMS_0967	BMS_3292	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	Putative 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.791
BMS_0967	rpsS	BMS_0967	BMS_3297	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.698
cspE	BMS_0967	BMS_0946	BMS_0967	Cold shock-like protein.	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.766
cspE	rhlE	BMS_0946	BMS_0947	Cold shock-like protein.	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.831
cspE	rplB	BMS_0946	BMS_3298	Cold shock-like protein.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.727
cspE	rplW	BMS_0946	BMS_3299	Cold shock-like protein.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.826
cspE	rplX	BMS_0946	BMS_3289	Cold shock-like protein.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.772
cspE	rpsE	BMS_0946	BMS_3283	Cold shock-like protein.	30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.726
cspE	rpsK	BMS_0946	BMS_3275	Cold shock-like protein.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.739
cspE	rpsL	BMS_0946	BMS_3308	Cold shock-like protein.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.792
cspE	rpsQ	BMS_0946	BMS_3292	Cold shock-like protein.	Putative 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.792
cspE	rpsS	BMS_0946	BMS_3297	Cold shock-like protein.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.757