STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (665 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase.
 
 0.999
BMS_3421
Putative imidazolonepropionase; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
 0.997
BMS_2192
Putative arginase family protein; Belongs to the arginase family.
 
  
 0.664
BMS_0980
Putative sodium/proton antiporter.
       0.495
guaD
Guanine deaminase.
  
  
 0.431
speB
Putative agmatinase; Belongs to the arginase family.
  
  
 0.403
BMS_2246
Putative agmatinase; Belongs to the arginase family.
  
  
 0.402
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.