Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BMS_0992Putative membrane protein. (656 aa)    
Predicted Functional Partners:
BMS_0990
Putative glutamyl-tRNA synthetase (pseudogene); PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
 
     0.932
BMS_0991
Putative membrane protein.
       0.773
BMS_0855
Conserved hypothetical protein.
  
     0.763
BMS_2622
Putative peptidase.
  
     0.762
BMS_2154
Hypothetical protein.
  
     0.710
BMS_1074
Putative exported protein.
  
     0.693
BMS_0456
Conserved hypothetical exported protein.
  
     0.662
BMS_1119
Putative membrane protein.
  
     0.626
BMS_0543
Putative manganese transport membrane protein.
  
     0.588
BMS_1188
Conserved hypothetical protein.
 
     0.583
Your Current Organism:
Halobacteriovorax marinus
NCBI taxonomy Id: 862908
Other names: Bacteriovorax marinus SJ, Bdellovibrio sp. SJ, H. marinus SJ, Halobacteriovorax marinus SJ
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